Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GALTTSTRQGSRVVGF-MDFIIALGWQIIPSNIRY-IYILNCSQFMPTSDVTTIYFQADSGLESIFVMDSP-----FYASC-----TQQLPDKTIKTYGVTISKKQS---------IISINFSSSLEP-NIMVSAWTASITRTQ--------------
3ZC4 Chain:A ((8-164))
-PVAETISKRFWTLIKMLRFYVVLRRFGYIDPLIYSIDPKQIKDVLSEALREFVSYTSSSSSRSIVIYDDPKNPVTAQAPCLVVAKRDEIPQNFPSIYRYTIYKIDKSSEYCISPLVVNDKYATLITPNESVIKEFFDKLDSNIQYARVLASLAVGGE
General information:
TITO was launched using:
RESULT:
Template:
3ZC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47718 for 681 contacts (-70.1/contact) +
2D Compatibility (PS) -11943 + (NN) 5287 + (LL) -172
1D Compatibility (HY) -7200 + (ID) 850
Total energy: -62596.0 ( -91.92 by residue)
QMean score : 0.117
(partial model without unconserved sides chains):
PDB file :
Tito_3ZC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZC4-query.scw
PDB file :
Tito_Scwrl_3ZC4.pdb
: