Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGV--SGNGYVTRQQDGARITQRGVT--HWTNPKSIVSIYFYLHQPTTADLSLYAKGHSEIKVSYGKKGFKVNLQSNDFTKVPVGSID-IRQAGYVRIDLQGVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYN--------SPTERRILF-SVWSP---FDTQNPKEIPDDQKIKLLRQGKDVHIG-----EFGNEGSGGQSYLKYPWKAGNTY-----KFLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLEN------------FSPEQG----YLSREVFFGNQ--WARSKEGKWS---RLTDATFTHDAT-----ASAQVRLDYQGGNTKDNRF-------YLKMGGFFNESVPMGTKFYCKPTGKEPEIDWEALKQL----------- |
| 1C4K Chain:A ((108-569)) | -----PPFFKSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVA----LGDLLIHE-GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALVSNG----DLVLFDRNNHK--SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFR---LAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLI-DDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPM-YAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPG---INPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPA-KMNNLITQLLQLQRLIEED |
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General information:
TITO was launched using:
| RESULT:
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Template: 1C4K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 70255 for 2972 contacts (23.6/contact) +
2D Compatibility (PS) -41020 + (NN) -13266 + (LL) 2676
1D Compatibility (HY) 4800 + (ID) 2800
Total energy: 20645.0 ( 6.95 by residue)
QMean score : 0.119
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