Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGSSHHHHHHSSGPQQGLRSNSDDAEKPVVPVPTGDVAIYTTTSSLTRDLTRDAVNFSPKDNLAPTTITLNPAEQYQTMDGFGAAITGSTCYNLLLMKPADRHAFLTETFSDKDGFGFSYIRISIGCSDFSLSEYTCCDTKG---IENFALQSEEKDYILPILKEILAI-NPSIKVIAAPWTCPKWMKVKSLTDRTPLDSWTNGQLNPDYYQDYATYFVKWIQAFKAEGIDIYAVTPQNEP----LNRGNSASLYMEWEEQRDFVKTALGPQMKAAGLSTKIYAFDHNYNYDNIESQK----NYPGKIYEDAAASQYLAGAAYHNY----GGNREELLNIHQAYPEKELLFTETSI-----------GTWNSGRDLSKRLMEDMEEVALGTINNWCKGVIVWNLMLDNDRGPNREGGCQTCYGAVDINNSDYKTIIRNSHYYIIAHLSSVVKPGAVRIATTGYTDNGITCSAFENTDGTYAFVLINNNEKSKKITVSDGQRHFAYDV-PGKSVTSYRWAKSK |
2NT1 Chain:A ((67-496)) | -------------------------------------------------------------------LTLQPEQKFQKVKGFGGAMTDAAALNILALSPPAQNLLLKSYFSE-EGIGYNIIRVPMASCDFSIRTYTYADTPDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNG---KGSLKGQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIARDLGPTLANST--------HHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNL----LYHVVGWTD----WNLALNPEGGPNWVRNFVDSPIIVDITKD---TFYKQPMFYHLGHFSKFIPEGSQRVGLVASQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWHR-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NT1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161957 for 3479 contacts (-46.6/contact) +
2D Compatibility (PS) -43049 + (NN) -16430 + (LL) 3916
1D Compatibility (HY) -32400 + (ID) 5850
Total energy: -255770.0 ( -73.52 by residue)
QMean score : 0.320
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