Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH
2LS3 Chain:A ((1-29))
----------------------------------------------------------------------------------------------------------------------------------KHLLQTVLHIIQVVISYFLMLIFMTYNKK-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LS3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14164 for 114 contacts (-124.2/contact) +
2D Compatibility (PS) -3098 + (NN) -2700 + (LL) 10536
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -17526.0 ( -153.74 by residue)
QMean score : 0.059
(partial model without unconserved sides chains):
PDB file :
Tito_2LS3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LS3-query.scw
PDB file :
Tito_Scwrl_2LS3.pdb
: