Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------------------------------MNRAPLKRSRILHMALTGASDPSAEAEANGEKPFLLRALQIALVVSLY------------WVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCK-----------GLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYN------VGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGGFW--LGVDQEGAEGTLSWL----GTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYN-----NVNACILFLP---------LLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTS----NMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKSAMGV |
4L6Y Chain:A ((6-454)) | RRSEVLAEESIVCLQKALNHLREIWELIGIPEDQRLQRTEVVKKHIKELLDMMIAEEESLKERLIKSISVCQKELNTLCSELHVEPFQEEGETTILQLEKDLRTQVELMRKQKKERKQELKLLQEQDQELCEILCMPHYDIDSASVPSLEELNQFRQHVTTLRETKASRREEFVSIKRQIILCMEELDHTPDTSFERDVVCEDEDAFCLSLENIATLQKLLRQLEMQKSQNEAVCEGLRTQIRELWDRLQIPEEEREAVATIMSGSKAKVRKALQLEVDRLEELKMQNMKKVIEAIRVELVQYWDQCFYSQEQRQAFAPFCAEYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEETWRLFLEFERKASDPNRRGGNLLKEEKQRAKLQKMLPKLEEELKARIELWEQEHSKAFMVNGQKFMEYVAEQWEMHRLEKERAKQER------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4L6Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142087 for 1896 contacts (-74.9/contact) +
2D Compatibility (PS) -36377 + (NN) -2351 + (LL) 512
1D Compatibility (HY) -800 + (ID) 2250
Total energy: -183353.0 ( -96.71 by residue)
QMean score : 0.092
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