Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MELEGRGAGGVAGGPAAGPGRSPGESALLDGWLQRGVGRGAGGGEAGACRPPVRQDPDSGPDYEALPAGATVTTHMVAGAVAGILEHCVMYPIDCVKTRMQSLQPDPAARYRNVLEALWRIIRTEGLWRPMRGLNVTATGAGPAHALYFACYEKLKKTLSDVIHPGGNSHIANGAAGCVATLLHDAAMNPAEVVKQRMQMYNSPYHRVTDCVRAVWQNEGAGAFYRSYTTQLTMNVPFQAIHFMTYEFLQEHFNPQRRYNPSSHVLSGACAGAVAAAATTPLDVCKTLLNTQESLALNSHITGHITGMASAFRTVYQVGGVTAYFRGVQARVIYQIPSTAIAWSVYEFFKYLITKRQEEWRAGK |
| 3VJJ Chain:A ((273-308)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QLATFDNYPFDLLRFQLSSLIS-------------TPALIREKIAKEGLFKIITTVLFRGINGSESFLNIKRYRKFKTRIVGNVDCVIKSDF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VJJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5457 for 148 contacts (-36.9/contact) +
2D Compatibility (PS) -3509 + (NN) 607 + (LL) 14936
1D Compatibility (HY) -1600 + (ID) 350
Total energy: 4627.0 ( 31.26 by residue)
QMean score : -0.067
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