Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDII-----STMFNRKFMEELFKPQELYSKKALRTVY-ERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDS-PTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEITEQPRLSTSKGDDLLAMMDEL |
5AIU Chain:B ((15-150)) | ----------------------QRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEE-YPMAAPKVRFMTKIYHPNVDKLGRIKLDILADKWSPALQIRTVLL--SIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AIU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -31609 for 921 contacts (-34.3/contact) +
2D Compatibility (PS) -12810 + (NN) 7314 + (LL) 16464
1D Compatibility (HY) -4800 + (ID) 2000
Total energy: -27441.0 ( -29.79 by residue)
QMean score : 0.128
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