Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKILFVEPAIFLSAFAMTLTGPLTTQYVYRRIWEETGNYTFSSDSNISECEKNKSSPIFAFQEEVQKKVSRFNLQMDISGLIPGLVSTFILLSISDHYGRKFPMILSSVGALATSVWLCLLCYFAFPFQLLIASTFIGAFCGNYTTFWGACFAYIVDQCKEHKQKTIRIAIIDFLLGLVTGLTGLSSGYFIRELGFEWSFLIIAVSLAVNLIYILFFLGDPVKECSSQNVTMSCSEGFKNLFYRTYM-LFKNASGKRRFLLCLLLFTVITYFFVVIGIAPIFILYELDSPLCWNEVFIGYGSALGSASFL-TSFLGIWLFSYCMEDIHMAF-IGIFTTMTGMAMTAFA--STTLMMFLA-RVPFLFTIVPFSVLRSMLSKVVRSTEQGTLFACIAFLETLGGVTAVSTFNGIYSATVAWYPGFTFLLSAGLLLLPAISLCVVKCTSWNEGSYELLIQEESSEDASDR |
| 2GFP Chain:A ((13-360)) | -----LVLLVAVGQMAQTIYIPAIADMARDL------NVR-----------------------------EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT----SSLTVLIAASAMQGMGTGVG--GVMARTLPRDLY-ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR-----------TRLLTSYKTLFGNS------GFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -341389 for 2879 contacts (-118.6/contact) +
2D Compatibility (PS) -32861 + (NN) 13015 + (LL) 6800
1D Compatibility (HY) -13600 + (ID) 2150
Total energy: -370185.0 ( -128.58 by residue)
QMean score : 0.173
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