Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------MGHHHHHHSHM-----------VVIHPDPGRELSPEEAHRAGLIDWNMFVKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFSIEEALQSGRLTPAHYDRYVNKDMSIQELAVLVSGQK-----------------------------------------------------------------------------------------------------
1LM7 Chain:A ((2209-2448))
SFQGIRQPVTVTELVDSGILRPSTVNELESGSYDEVGERIKDFLQGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTALELLEAQ---------AATGF---IVDPVSNLRLPVEEAYKRGLVGIEFKEKLLSAERAVTGYNDPETGNIISLFQAMNKELIEKGHGIRLLEAQIATGGIIDPKESHRLPVDIAYKRGYFNEELSEILSDPSDDTKGFFDPNTEENLTYLQLKERCIKDEETGLCLLPLKE
General information:
TITO was launched using:
RESULT:
Template:
1LM7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3327 for 617 contacts (5.4/contact) +
2D Compatibility (PS) -10285 + (NN) -3467 + (LL) 912
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -13113.0 ( -21.25 by residue)
QMean score : 0.181
(partial model without unconserved sides chains):
PDB file :
Tito_1LM7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LM7-query.scw
PDB file :
Tito_Scwrl_1LM7.pdb
: