Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKTNKIIFIVFIVIFIGLSYRHFTNTDKARMEISSLSSIDVFKFNSFSKFSNDKIGVIYDEEKLSKFKVIMNSLDTSEGIKKIEVPKDANIESFKYSYHIQPNLKYVEDNNVYDGYFLLYILVGDSEGKSYIIFSGTELSYVLDKNNTNILKEIFLNVKKQQ----
1GNU Chain:A ((1-117))
MKF----------------VYKEEHPFEKRRSEGEKIRKK-----------YPDRVPVIVEKAPKARIGDLDK--------KKYLVPSDLTVGQFYFLIRKRIHLRAEDA---------LFFFVNNV-----IPPTSATMGQLYQEHHEED-FFLYIAYSDESVYGL
General information:
TITO was launched using:
RESULT:
Template:
1GNU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11096 for 809 contacts (-13.7/contact) +
2D Compatibility (PS) -11900 + (NN) -2213 + (LL) 3424
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -28735.0 ( -35.52 by residue)
QMean score : 0.103
(partial model without unconserved sides chains):
PDB file :
Tito_1GNU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GNU-query.scw
PDB file :
Tito_Scwrl_1GNU.pdb
: