Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNKRLLTVAAFALAGCVTVVAQDKKKEFKMPTGYAGITHEMSEFYEPVPPVVTPGTDLKGGGFTAPSDAIVL-FDGKDLSAWESVKGGA--AEWDVHDGVFTV-------NKKKGDIQTKQKFNDFQMHIEWQVPTNITGESQSR---GNSGIFLQGMYEVQVLDCYN-NPTYV----NGQTGSIYKQS-I-PLANAMRKPGEWNVYDIIYTAPTFKE--DGSYRTHPTVTVIQNGVVLQN----HTTILGTTEWIGFPQ-VKKHGAGPIIL-QSHGDPSEPISFRNIWIREL |
3H3L Chain:A ((10-241)) | ------------------------------------------------QALDSDGI--------PTGGEWITMFDGKTLNGWRGYCRQDVPLGWVVEDGSITYKGSDNKADTGFGDLIYDKKFKNFVFEIEWKIDKAGNSGIFYTAQEIEGTPIYYSSPEYQLLDNENMPDAWEGCDGNRQAGAVY--DMIMPDPQPVKPYGNWNKTRIVVYNQRVIHYMNDVKILEFQFGTPVWRALVDHSKFSKFSTSPEKCPEAYDLMLQCGKQPGYIGMQDHGYG---VCFRNIRIKEL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3H3L.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -15778 for 1480 contacts (-10.7/contact) +
2D Compatibility (PS) -22405 + (NN) -8771 + (LL) 3996
1D Compatibility (HY) -8800 + (ID) 2300
Total energy: -54058.0 ( -36.53 by residue)
QMean score : 0.172
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