Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGV-SYSD-GHFLTKSGGV--------INF-RKTRVTSITITILG----NYGLRVVNGELQNTPLTFKGADFKSSTLKDEL-LIPLEGAVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHET-IQYMHIVTVHPFLSLTA
3NAT Chain:A ((1-163))
-SNAMKKATMLTYLEEQLEKHLGDYEVGLDWDRKNHTIEVIVRLYAENNEQVAIDDVEFIEFEDGLLFYNPQKSVVDDEEYLVTIPYEGKKGLRKAVLDGFIHYLKVVLDEGQSDLLDFLSDETAEVFELHW-EPADFEAMIKKVAETEKEQWIAYPS
General information:
TITO was launched using:
RESULT:
Template:
3NAT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49338 for 874 contacts (-56.5/contact) +
2D Compatibility (PS) -14544 + (NN) -119 + (LL) -72
1D Compatibility (HY) -4400 + (ID) 950
Total energy: -69423.0 ( -79.43 by residue)
QMean score : 0.092
(partial model without unconserved sides chains):
PDB file :
Tito_3NAT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NAT-query.scw
PDB file :
Tito_Scwrl_3NAT.pdb
: