Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
3RWM Chain:B ((7-180))
YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQV------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108621 for 1386 contacts (-78.4/contact) +
2D Compatibility (PS) -19443 + (NN) -9860 + (LL) 408
1D Compatibility (HY) -21200 + (ID) 6100
Total energy: -164816.0 ( -118.91 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3RWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RWM-query.scw
PDB file :
Tito_Scwrl_3RWM.pdb
: