Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GALTTSTRQGSRVVGFMDFIIALGWQIIPSNIRYIYILNCSQFMPT-SDVTTIYFQADSGLESIFVMDSPFYASCTQQLPDKTIKTYGVTISKKQSIISINFSSSLEPNIMVSAWTASITRTQ
2NLW Chain:A ((1-105))
GDVLKDRPQEAD--GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKT----KGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDFDKYMT------------
General information:
TITO was launched using:
RESULT:
Template:
2NLW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39111 for 630 contacts (-62.1/contact) +
2D Compatibility (PS) -10935 + (NN) -2886 + (LL) 2044
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -53038.0 ( -84.19 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_2NLW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NLW-query.scw
PDB file :
Tito_Scwrl_2NLW.pdb
: