Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQ---QDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADLSLYAKGHSEIKVSYGKKG-----FKVNLQSNDFTKVP----VG-SIDIRQAGYVRIDLQGVSKSGEGFG--EIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTERRILFS--VWSPFDTQNPKEIPDDQKIKLLRQGKD--VHIGEFG---NEGSGGQSYLKY--PWKAGNTYKFLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGN-QWA-RSKEGKWSRLTDATFTHDATASAQVRLDYQGGNTKDNR-FYLKMGGFFNESVPMGTKFYCKPTGKEPEIDWEALKQL---------- |
| 1GDE Chain:A ((2-389)) | ALSDRLELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVTDKT--RALIINSPCN---------------PTGAV--------LTKKDLE-----EIADFVVEH----------DLIVISDEVYEHFIYDDARHYS----IASLDGMFERTITVNGFSKTFAM-TGWRLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDERSWKAVEEMRK-EYDRRRKLVWKRLN----EMGLPTVKPKGAFYIFPRIRDTGL-----------TSKKFSELMLKEARVAVVPGSAFGKAGEGYVRISY-----------ATAYEKLEEAMDRMERVLKERKLV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 51642 for 2867 contacts (18.0/contact) +
2D Compatibility (PS) -37371 + (NN) -11762 + (LL) 2604
1D Compatibility (HY) -7200 + (ID) 2750
Total energy: -4837.0 ( -1.69 by residue)
QMean score : 0.142
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