Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AARYDDVLYFPASRYPETGAHISDAIKAGHADVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSD-NRGAGS---WVGNRLNGYADGTRILFIVQ--------------
1IM3 Chain:D ((1-95))
---------------PWF--QIED-------NRCYIDNGKLFAR--GSIVGNMSRFVFD----PKA--DYGGVGENL-YVHADDVEFVPGESLKWNVRNLDVMPIFETLALRLVLQGDVIWLRCVPEL
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8934 for 453 contacts (19.7/contact) +
2D Compatibility (PS) -8332 + (NN) -2640 + (LL) 2500
1D Compatibility (HY) -3200 + (ID) 1050
Total energy: -3788.0 ( -8.36 by residue)
QMean score : 0.077
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: