Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWLKGLRGFFFVGVL------FSAVSIAAFCTFLVLA--ITRHQSLTDPTSYYLSSVWSFISFKWAFLLSLYAHRYRADFA---DISILSDF------
2CWO Chain:A ((1-177))
MKFFLKDGETSRALSRSESLLRRVKELGTNSQQSEI--SECVDEFNELASFNHLLVTVEHREWMEQRIGEMLKEIRAFLKVRVVTPMHKETASDTLNAFLEEYCRITGLAREDALREKMRKVKSVVLFHHSELLKFEVTENMFSYTELLKLNLSLRVISSQILGMAI
General information:
TITO was launched using:
RESULT:
Template:
2CWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117720 for 938 contacts (-125.5/contact) +
2D Compatibility (PS) -14516 + (NN) -666 + (LL) 192
1D Compatibility (HY) -5600 + (ID) 1300
Total energy: -139610.0 ( -148.84 by residue)
QMean score : 0.248
(partial model without unconserved sides chains):
PDB file :
Tito_2CWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CWO-query.scw
PDB file :
Tito_Scwrl_2CWO.pdb
: