Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGAGGPRRGEGPPDGGWGWVVLGACFVVTGFAYGFPKAVSVFFRALMRDFDAGYSDTAWVSSIMLAMLYGTGPVSSILVTRFGCRPVMLAGGLLASAGMILASFATRLLELYLTAGVLTGLGLALNFQPSLIMLGLY------FERRRPLANGLAA-----AGSPVFLSALSPLGQQLLERFGWRGGFLLLGGLLLHCCACGAVMRPPPGPGPRPRRDSAGDRAGDAPGEAEADGAGLQLREASPRVRPRRRLLDLAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKDAGVPDTDAAFLLSIVGFVDIVARPACGALAGLARLRPHVPYLFSLALLANGLTDLSSARARSYGALVAFCVAFGLSYGMVGALQFEVLMAAVGAPRFPSALGLVLLVEAAAVLIGPPSAGRLVDVLKNYEIIFYLAGSEVALAGVFMAVATNCCLRCAKAAPSGPGTEGGASDTEDAEAEGDSEPLPVVAEEPGNLEALEVLSARGEPTEPEIEARPRLAAESV |
4ZYR Chain:A ((279-408)) | --------------------------------------------------------------------------APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV----ILKTLHM---FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA---GNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4ZYR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68496 for 728 contacts (-94.1/contact) +
2D Compatibility (PS) -12435 + (NN) -8101 + (LL) 24180
1D Compatibility (HY) -13600 + (ID) 1650
Total energy: -80102.0 ( -110.03 by residue)
QMean score : 0.225
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