Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEVKSLLMVMATLTIAGCSQNEMTEMNPDTNRTIGLDVYTEVQTRGTETTTSTLKANAGFGIFAYQTSSAGWNSEKGNTTPNFMYNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVG-TDQKITLSGQNAKGAPTITFEVKTSNNWKDMIDLVTDCHTAIQ-DQTNESNKGTVQFK-FSHVLTQ-IANIKVKPDV-NLG-TDTKIFVTGLKLDPGSTTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSDTEALYFIPVNNKNGTTNAGDLKLKINYDIVTKVTDTSNLTSTITNKEVSLPKNTFKKGTKHTYVLTIKMNAIKITVEDNMEGWTDDSDSDINVEK |
| 4H40 Chain:A ((13-324)) | ---RVRIDPVAGGYYPSISPSRGATPDGETLK---------------DRPIFLLEDGSTIRLVVYD------DAKNLLEEYSKAYLVRNAGTS---GSSLLYPCEVDDN-----GAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNG--EYLLATDDRYTQTAMTAVTITNVQTLYLPPIINQTARMQFTVRAGEGVHTLEMLAEGIEISGIQQPLDNTTSFD----------WVNGDVLPVKVG-DQSASVRITQATRNADNSLVAHTGV------------------LP-------TDARSHSISVLLNLKVNGNPTQYQ---------LLTGLYLTAGHSYNYTATVKISNGVTVLTWQNRSWTENVV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4H40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 24079 for 2182 contacts (11.0/contact) +
2D Compatibility (PS) -30837 + (NN) -4396 + (LL) 5004
1D Compatibility (HY) 400 + (ID) 1900
Total energy: -7650.0 ( -3.51 by residue)
QMean score : 0.110
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