Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | SMHPQAVAAVLPAGGCGERMGVPTPKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQHK---RISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIKERISQEICVVMDTEEDNKHVGHLLEEVLKSELNHVKVTSEALGHAGRHLQQIILDQCYNFVCVNVTTSDFQETQKLLSMLEESSLCILYPVVVVSVHFLDFKLVPPSQKMENLMQIREFAKEVKERNILLYGLLISYPQDDQKLQESLRQGAIIIASLIKERNSGLIGQLLIA |
2YC3 Chain:A ((3-226)) | ----KSVSVILLAGGQG-------PKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCD----PFFRDIFEEYEESIDVDLSFAIPGKERQDSVYSGLQEI---DVNS-----ELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQTPQVIKPELLKKGFELVKSEGLEV-TDDVSI-VEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160259 for 1669 contacts (-96.0/contact) +
2D Compatibility (PS) -22088 + (NN) -1948 + (LL) 15812
1D Compatibility (HY) -14800 + (ID) 3150
Total energy: -186433.0 ( -111.70 by residue)
QMean score : 0.206
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