Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --------------------MGPNAVEL-TTDQAWCLADVLGAG----------SYPWVLAITPPYSDHSQRSAFLAAQSAELTRMGV---VNSAGAVDPRVAQWITTVCRATQWLDLRFVSGPGDLLRGMVARRSEETVVAL-RNAQLVTFTAMDIGHQHALVPVLTAGLSGRKPARF-----DDFALPAAAGARADEQIRN--GAPLAEVLEFLG--VPPSARPLVESVFDGRRTYVEIVAGE-----------HRDGHRVTTEVGVSIIDTPHGRILVHPTKAFDGEWISTFTPGSADAIAMAVERLTASLPSGSWFPDQ-PLTRDFDEDAATHREPVLQRRTQKA |
| 1VPW Chain:A ((2-339)) | TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSMKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV-------RNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPF---RDYR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -55713 for 2130 contacts (-26.2/contact) +
2D Compatibility (PS) -30467 + (NN) -13654 + (LL) 1128
1D Compatibility (HY) -4400 + (ID) 1800
Total energy: -104906.0 ( -49.25 by residue)
QMean score : 0.289
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