Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
3RWO Chain:B ((7-175))
YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMV-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116016 for 1363 contacts (-85.1/contact) +
2D Compatibility (PS) -18781 + (NN) -9415 + (LL) 888
1D Compatibility (HY) -20800 + (ID) 6000
Total energy: -170124.0 ( -124.82 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_3RWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RWO-query.scw
PDB file :
Tito_Scwrl_3RWO.pdb
: