Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---------------MSEAALTPAFEEPEAPRASPRSRSTLLKRLADVVCLPSSRINAFERSMT-----ADLLVEMLRDANVGEREKVARRLAMLNEMPGVLVRLLLRDELPVARALLVDSEKLSDADLISCLYQATTEHRRLIAQRRGVSEVVADALIEVGEPAVIETLLRNELVKLSHQGVENIVAATRDAQHLIPLLLRRAELRPSHAYVMFWWADSEARRVILQRFAVSREILQ------DAVGDVFALASAEGWQDPLSRKALQFIERRQRNRAAIAKSPFNSLDEAVAAGEGGFNREIAEEISYLSGLKPMTGAKIFTDPGGEPLAILCKATGLPRGCVRQLWRGLRRQEVDRTGATDPNLERVLTVYDAIAVDRAQTVLRYWNWSLTSALTPALLKAIRDGDEAAVDEYSAPQRAAMLALSRDFGR |
1LRV Chain:? ((9-241)) | TPIGDCRVCSFRMSLLLTGRCTPG--DACVAVESGRQIDRFFRNNPHLAVQYLADPFWERRAIAVRYSPVEALTPLIRDSDEVVRRAVAYRLPR-----EQLSALMFDEDREVRITVADR---LPLEQLEQMAADRDYLVRAYVVQR--IPPGRLFRFMRDEDRQVRKLVAK----RLPEESLGLM--TQDPEPEVRRIVASR--LRGDDLLELLHDPDWTVRLAAVEH--ASLEALRELDEPDPEVRLAIAGRL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LRV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109984 for 1507 contacts (-73.0/contact) +
2D Compatibility (PS) -20942 + (NN) 809 + (LL) 13800
1D Compatibility (HY) -3600 + (ID) 1650
Total energy: -121567.0 ( -80.67 by residue)
QMean score : 0.206
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