Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTKEENGKIISKVVFLQENGLLNKQVRYEFQYNENGKVSEKKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS
3A4U Chain:A ((120-213))
-------------------------------FFDSFDNDGKKNNPAIVIIGN---NGQIHYDHQ--NDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGF-TPDKNDYEFCAKVENMIIPAQGH-----
General information:
TITO was launched using:
RESULT:
Template:
3A4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 41559 for 576 contacts (72.2/contact) +
2D Compatibility (PS) -10066 + (NN) -3199 + (LL) 3184
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: 28678.0 ( 49.79 by residue)
QMean score : 0.109
(partial model without unconserved sides chains):
PDB file :
Tito_3A4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A4U-query.scw
PDB file :
Tito_Scwrl_3A4U.pdb
: