Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAK---PEIEKMMRSLAAGIMLMQVKDTS--SPVNGAFLSWQNLWHGYGNSQ-AYALLVAGNRLGDRDMIKAAFNELDHFHPWLI-SNG------LLNEFTVRQQGEKVTLIEQKKFSQI---AYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESI-----PDAKRMLESALEKRN-IKQ---------------------------------------------------------- |
| 1VD5 Chain:A ((1-377)) | -------------------------------------------------------------------------------------MWQQAIGDALGITARNLKKFG--DRFPHVSDGSNKYVLN------DNTDWTD-GFWSGILWLCYEYTGDEQYREGAVRTVASFRERLD---------------------RFENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRRWRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDP----ENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFL--ARV------PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -98470 for 2379 contacts (-41.4/contact) +
2D Compatibility (PS) -32503 + (NN) -21748 + (LL) 10164
1D Compatibility (HY) 3200 + (ID) 1800
Total energy: -141157.0 ( -59.33 by residue)
QMean score : 0.281
|
|
|