Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEPIILRYFPVLGRAQALRHALADAELAFRDLRIPLEQWSQHKDSDAGGPYGSLPTLRWHGVEVAETIAIASFLARSLGHYEGRDNGEIARLEAVVSLCYTEVSLQIAQLLWLDLFNPGVDLAAAVPLQFGRLVARLTRLEAHTPEAGWFGGERPVMADYFAAEAIEALRYLLGREHDDALRTRLPHLCALARRMAQRPALAQAWSTRPQTFTAHPDEAAMLERLRALPLAATIGASME
4PGT Chain:A ((3-198))
---PYTVVYFPVRGRCAALRMLLADQGQSWKEEVVTVETW-QEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHLGRTLGLY-GKDQQEAALVD-MVNDGVEDLRCKYVSLIYTNYEAGKDDYVKALP---GQLKPFETLLSQNQGGKTFIVGDQISFADYNLLDLL-LIHEVLAPGCLDA----FPLLSAYVGRLSARPKL-KAFLASPE-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103658 for 1470 contacts (-70.5/contact) +
2D Compatibility (PS) -22178 + (NN) -19039 + (LL) 4176
1D Compatibility (HY) -12000 + (ID) 2800
Total energy: -155499.0 ( -105.78 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_4PGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PGT-query.scw
PDB file :
Tito_Scwrl_4PGT.pdb
: