Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--GHMGSPVSYYFSYADGGTSHTEYPDDSSAGSFILDITSYKKTGNSTKALSWNASGDS----WIHVNGSSVSYDENPAKERRTGLVTLKQDESGKTLSLKIV-QPGKTSID------
3IMO Chain:A ((20-133))
HMALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYN----HSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL
General information:
TITO was launched using:
RESULT:
Template:
3IMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -264 for 616 contacts (-0.4/contact) +
2D Compatibility (PS) -11009 + (NN) -2618 + (LL) 172
1D Compatibility (HY) -2000 + (ID) 450
Total energy: -16169.0 ( -26.25 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_3IMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IMO-query.scw
PDB file :
Tito_Scwrl_3IMO.pdb
: