Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQDYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTS----YYLSSVWSFISFKWAFLLSLYAHRYRADFADISILSDF
1EFN Chain:B ((18-150))
----RPQVPLRP--MTYKAAVDLSHFLKEK-----------GGLEGLI-------HSQRRQDILDLWIYHTQGYF-----------PDWQNY-----TPGPGVRYPLTFGWCYKLVPVREVLEWRFDSRLA-FHHVARELHPEYF-----
General information:
TITO was launched using:
RESULT:
Template:
1EFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58602 for 637 contacts (-92.0/contact) +
2D Compatibility (PS) -9881 + (NN) 4529 + (LL) 5052
1D Compatibility (HY) -4400 + (ID) 1250
Total energy: -64552.0 ( -101.34 by residue)
QMean score : 0.084
(partial model without unconserved sides chains):
PDB file :
Tito_1EFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EFN-query.scw
PDB file :
Tito_Scwrl_1EFN.pdb
: