Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGHHHHHHSHMVVIHPD---PGRELSPEEAHRAGLIDWNMF-VKLRSQECDWEEISVKGPNGESSVIHDRKSGKKFS--------------IEEALQSGRLTPAHYDR--YVNKDMS--IQELAVLVSGQK----
3LAD Chain:A ((349-472))
---YDLIP-AVIYTHPEIAGVG--KTEQALKAEG-VAINVGVFPFAASG---RAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFG-TSAEDLGMMVFAHPALSEALHEAALAVSGHAIHVA
General information:
TITO was launched using:
RESULT:
Template:
3LAD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5625 for 646 contacts (8.7/contact) +
2D Compatibility (PS) -10749 + (NN) -3589 + (LL) 668
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -12945.0 ( -20.04 by residue)
QMean score : 0.141
(partial model without unconserved sides chains):
PDB file :
Tito_3LAD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAD-query.scw
PDB file :
Tito_Scwrl_3LAD.pdb
: