Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------MEVK-----SLLMVM---ATLTIAGCSQNEMTEMNPDTNRTIGLDVYTEVQ-TRGTETTTSTLKANAGFGIFAYQTSSAGWNSEKGNTTPNFMYNEHATWTSDSWGYTNLRFWPIDDKKITFFAYAPYESKPEVGTDQKITLSGQNAKGAPTITFEVKTSNNWK-DMIDLVTDCHTAIQDQTNESNKGTVQFKFSHVLTQIANIKVKPD---VNLGTDTKIFVTGLKLDPGSTTL-YNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDQWGYNKSSINVSDDQNATALFSD-TEALYFIPVNNKNGTTNAGDLKLK----INYDIVTKVTDTSNLTSTITNKEVS-LPKN--TFKKGTKHTYVLTIKMNAIKITVEDNMEGWTDDSDSDINVEK----------
2VDU Chain:B ((2-436))SVIHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----LKLRKRFCFSKRPNAISIAE----------DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK-HFVSSICCGKDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAIIEFA------------------------VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ----KGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYNVSSL


General information:
TITO was launched using:
RESULT:

Template: 2VDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 37002 for 2576 contacts (14.4/contact) +
2D Compatibility (PS) -35633 + (NN) -5391 + (LL) 1536
1D Compatibility (HY) -12000 + (ID) 2900
Total energy: -17386.0 ( -6.75 by residue)
QMean score : 0.083

(partial model without unconserved sides chains):
PDB file : Tito_2VDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2VDU-query.scw
PDB file : Tito_Scwrl_2VDU.pdb: