Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----GEGVSYSDGHFLTKSGGVINFRKTRVTSITITILGNYG------------LRVVNGELQNTPLTFKGADFKSSTLKDELLIPLEG-AVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA
1IM3 Chain:D ((1-95))
PWFQIEDNRCYIDNGKLFARGSIVG----NMSRFVFDPKADYGGVGENLYVHADDVEFVPGE--SLKWNVRNLDVMPIFETLALRLVLQGDVIWLRCVPEL----------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1IM3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9289 for 483 contacts (-19.2/contact) +
2D Compatibility (PS) -8150 + (NN) -244 + (LL) 6408
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -17225.0 ( -35.66 by residue)
QMean score : 0.056
(partial model without unconserved sides chains):
PDB file :
Tito_1IM3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IM3-query.scw
PDB file :
Tito_Scwrl_1IM3.pdb
: