Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | SNINKAKVASVESDYSSIKSAALSYYSDTNK-IPVTPDG-QTGLNVLETYMESLPDKADIGGEYKLIKVGNKLVLQ---IGKDGEGVTLTEAQSAKLLSDIGKDKIYTGVTGDNFGEQLKDTTKIDNKALYIVLIDNTVMDSTK |
4K0Q Chain:D ((76-170)) | -----AKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQV-------------VAGPDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGD------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K0Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 10909 for 489 contacts (22.3/contact) +
2D Compatibility (PS) -8951 + (NN) 1326 + (LL) 2924
1D Compatibility (HY) -2400 + (ID) 1700
Total energy: 2108.0 ( 4.31 by residue)
QMean score : 0.084
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