Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADL--SLYAKGHSEIKVSYGKKGFKVNLQSNDFTKVPVGSIDIRQAGYVRIDLQ-GVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYNSPTERRILFSVWSPFDT---QNPKEIPDDQKIKLLRQGKD---VHIGEFGNEGSGGQSYLKYPWKAGNTYK-FLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGNQWARSKEGKWSRLTDATFTHDATASAQVRLDYQGGNTKDNRFYLKMGGFFNESVPMGTKFYCKPTGKEPEIDWEALKQL |
| 1S4N Chain:A ((10-348)) | ----KTTMDYITPSFKAGKPKACYVTLVRNKELKGLLSSIKYVENKINKKFP----YPWVFLNDEPFTEEFKEAVTKAVSSE--VKFGIL-------PKEHWSYP-EWINQTKAAEIRADAATKYIYGGSESYRHMCRYQSGFFWRHELLEEYDWYW-RVEPDIKLYCDIN-----------------YDVFKWMQENEKVYGFT---VSIHEYEVTIPTLWQTSMDFIKKNPEYLDENNLMSFLSNDNGKTYNLCHFWSNF-----EIANLNLWRSPAYREYFDTL--DHQGGFFYERW---GDAPVHSIAAALFLPKDKIH------YFSDIG---------YHHPPYDNCPLDKEVYNSNNCECDQGND------FTFQGYSCGKE--YYDAQGL-----------------VKPK-NWKKFRE- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1S4N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3662 for 2682 contacts (-1.4/contact) +
2D Compatibility (PS) -34623 + (NN) -9367 + (LL) 4156
1D Compatibility (HY) -14800 + (ID) 2050
Total energy: -60346.0 ( -22.50 by residue)
QMean score : 0.175
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