Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAPSRLQLGLRAAYSGISSVAGFSIFLVWTVVYRQPGTAAMGGLAGVLALWVLVTHVMYMQ--DYWRTWLKGLRGFFFVGVLFSAVSIAAFCTFLVLAITRHQSLTDPTSYYLSSVWSFISFKWAFLLSLYAHRYRADFADISILSDF
3Q87 Chain:A ((1-125))
MKPFLLGL-LKCKRCSFMT----KLILECEKAESNDVDVK-----------IFNKHMFTENGGERLKSLVNSLRDFH--GRELSEQDISSFVEN-----PGDDEKIKEFLFGIDVVEGSLRCDMCGLIYPIKGSIVETVDTVESK---
General information:
TITO was launched using:
RESULT:
Template:
3Q87.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88713 for 843 contacts (-105.2/contact) +
2D Compatibility (PS) -12308 + (NN) 739 + (LL) 2224
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -103658.0 ( -122.96 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_3Q87.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q87-query.scw
PDB file :
Tito_Scwrl_3Q87.pdb
: