Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGPNAVELTTDQAWCLADVLGAGSYPWVLAITPPYSDHSQRSAFLAAQSAELTRMGV---VNSAGAVDPRVAQWITTVCRATQWLDLRFVSGPGDLLRGMVARRSEETVVAL-RNAQLVTFTAMDIGHQHALVPVLTAGLSGRKPARFDDFALPAAAGARADEQIRN-GAPLAEVLEFLG--VPPSARPLVESVFDGRRTYVEIVAGE-----------HRDGHRVTTEVGVSIIDTPHGRILVHPTKAFDGEWISTFTPGSADAIAMAVERLTASLPSGS------WFPDQPLTRDFDEDAATHREPVLQRRTQKA |
| 1DBQ Chain:A ((8-289)) | --------------------------KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNV-------RNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERR-SVADGPFRD--YRR----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1DBQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -59627 for 1931 contacts (-30.9/contact) +
2D Compatibility (PS) -27314 + (NN) -10667 + (LL) 2524
1D Compatibility (HY) -7600 + (ID) 1650
Total energy: -104334.0 ( -54.03 by residue)
QMean score : 0.251
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