Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------GA--LTTSTRQGSRVVGFMD--FIIALGWQIIPSNIRYIYILNCSQFMPTSDVTTIYFQADSGLESIFVMDSPFYASCTQQLPD-KTIKTYGVTISKKQ--SIISINFSSSLEPNI-MVSAWTASITRTQ
1W9S Chain:A ((7-140))
DLKNPYERIQAEAYDAMSGIQTEGTDDDGGGDNIGWINDGDWVKYE-RVHFERDASSIEVRVASDTPGGRIEIRTGSPTGTLLGDVQVPNT---------GGWQQWQTVTGNVQIQPGTYDVYLVFKGSPEYDLMNVNWFVFRA----
General information:
TITO was launched using:
RESULT:
Template:
1W9S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54854 for 754 contacts (-72.8/contact) +
2D Compatibility (PS) -11836 + (NN) -7363 + (LL) 1344
1D Compatibility (HY) -1200 + (ID) 550
Total energy: -74459.0 ( -98.75 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1W9S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W9S-query.scw
PDB file :
Tito_Scwrl_1W9S.pdb
: