Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ---MKNLLCLLALLLCTTVFAQPQQVVVGVSGNGYVTRQQDGARITQRGVTHWTNPKSIVSIYFYLHQPTTADLSLYAKGHSEIKVSYGKKGFKVNLQSNDFTKVPVGSID--IRQAGYVRIDLQGVSKSGEGFGEIKQLIADNVTGKSNYVKDFSDYWGRRGPSVHLGYALPEGDTEWFYNEITVPKEGETMHSYYMAAGFGEGYFGMQYN-----SPTERRILFSVWS-------PFDTQNPKEIPDD---QKIKLLRQGKDVHIGEFGNEGSGGQSYLKYPWKAGNTYKFLMQIRPDGNGNTTYTAYFYATDEKEWKLIASFLRPKTNTWYKRPHSFLENFSPEQGYLSREVFFGNQWARSKEGKWSRLTDATFTHDATASAQVRLDYQ---------GGNTKDNRFYLKMGGFFNESVPM----------GTKFYCKPTGKEP-EIDWEALKQL------ |
| 1VLJ Chain:A ((10-407)) | HHHMENF-----------VFHNPTKIVF---GRG--TIPKIGEEIKNAGIR---------KVLFLYGGGSIKKNGVYDQ----VVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS-VVDSAKAVAAGALYEGDIWDAFIGK-YQIEKALPIFDVLTISATGTEMNGNAVITN-EKTKEKYGVSSKALYPKVSIIDPSVQFTLPKEQTVYGAVDAISHILEYYFDGSSPEISNEIAEGTIRTIMK----MTERLIEKPDDYEARANLAWSATIA---LNGTMAVGRRGGEWAC-----HRIEHSLSALYDIAHGAGLAIVFPAWMKYVYRK-----------------NPAQFERFAKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVS-----LKDAGIPEEDIDKIVDNVMLLVEKNLKPKGASLGRIMVLEREDVREILKLAAK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VLJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 64850 for 3001 contacts (21.6/contact) +
2D Compatibility (PS) -37789 + (NN) -14989 + (LL) 3980
1D Compatibility (HY) -8400 + (ID) 2300
Total energy: 5352.0 ( 1.78 by residue)
QMean score : 0.102
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