Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGLLSNFRNTIIVSFVLAL-----VIVIGYGHSPHGHDATYFQAIFRWLHVLFGILWIGLLYYFNFVQIRVMPQIPAELKPAVSKYIAPEALFWFRWAALATWVMGVLL-----AYNRGYLVEAFTLGLAGGYTPGVDMGFTFIGTGMWLATVMFFNVWVFIWPNQKIALGIVEADADAKAKAAKTAMLVSRTNTLLSIPMLATMAMHQTLFG-----
3A1Y Chain:G ((1-284))
-MAHVAEWKKKEVEELAKLIKSYPVIALVDVSSMP----AYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAKELGKPELEKLVEYIDRGAGILVTNMNPFKLYKFLQQNRQPQPLEVGLDVLAVYED---GIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGYITKETIQDIIGRAFRAMLLLAQQLP
General information:
TITO was launched using:
RESULT:
Template:
3A1Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147701 for 1221 contacts (-121.0/contact) +
2D Compatibility (PS) -20953 + (NN) -10257 + (LL) 196
1D Compatibility (HY) -800 + (ID) 1100
Total energy: -180615.0 ( -147.92 by residue)
QMean score : 0.118
(partial model without unconserved sides chains):
PDB file :
Tito_3A1Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3A1Y-query.scw
PDB file :
Tito_Scwrl_3A1Y.pdb
: