Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDHSHHMGMSYMDSNSTMQPSHHHPTTSASHSHGGGDSSMMMMPMTFYFGFKNVELLFSGLVINTAGEMAGAFVAVFLLAMFYEGLKIARESLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVVISYFLMLIFMTYNGYLCIAVAAGAGTGYFLFSWKKAVVVDITEHCH
1MM4 Chain:A ((1-170))
MNADEWMTTFRENIAQTWQQPEHYDLYIPAITWHARFAYDK--EKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFK-----------DSWNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGPVTFQMTY-------IPGTYNNGNVYFAWMRFQFLEHHHHHH
General information:
TITO was launched using:
RESULT:
Template:
1MM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51319 for 893 contacts (-57.5/contact) +
2D Compatibility (PS) -19039 + (NN) -5009 + (LL) 2108
1D Compatibility (HY) 2800 + (ID) 1150
Total energy: -71609.0 ( -80.19 by residue)
QMean score : -0.166
(partial model without unconserved sides chains):
PDB file :
Tito_1MM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MM4-query.scw
PDB file :
Tito_Scwrl_1MM4.pdb
: