Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAMHFIFSDTAVLLFDFWSVHSPAGMALSVLVLLLLAVLYEGIKVGKAKLLNQVLVNLPTSISQQTIAETDGDSAGSDSFPVGRTHHRWYLCHFGQSL-IHVIQVVIGYFIMLAVMSYNTWIFLGVVLGSAVGYYLAYPLLSTA
2CI5 Chain:A ((16-64))
-----------------------------------------------------VVRALPESLAQQALRRTKGDEV---DFARAERQHQLYVGVLGSKLGLQVVQLPADESLPDCVFVEDVAVVCEETALITRPGAPSRRKEADM
General information:
TITO was launched using:
RESULT:
Template:
2CI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14290 for 219 contacts (-65.3/contact) +
2D Compatibility (PS) -4706 + (NN) 256 + (LL) 5040
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -19300.0 ( -88.13 by residue)
QMean score : 0.121
(partial model without unconserved sides chains):
PDB file :
Tito_2CI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CI5-query.scw
PDB file :
Tito_Scwrl_2CI5.pdb
: