Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAATAAAALAAADPPPAMPQAAGAGGPTTRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHN------HHYKHLGVFSALRAVPQKEGFLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTLITTKLG-----ISGHVHRLMAGSMAGMTAVICTYPLDMVRVRLAFQVK---GEHSYTGIIHAFKTIYAKEGGFFGFYRGLMPTILGMAPYAGVSFFTFGTLKSVGLSHAPTLLGRPSSDNPNVLVLKTHVNLLCGGVAGAIAQTISYPFDVTRRRMQL-GTVLPEFEKCLTMRDTMKYVYGHHGIRKGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN |
| 1OKC Chain:A ((2-293)) | ------------------------------DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDG-LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNV---------------HIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEG-PKAFFKGAWSNVLRGMGGAFVLVLYDEI-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118054 for 2021 contacts (-58.4/contact) +
2D Compatibility (PS) -28217 + (NN) 6143 + (LL) 2864
1D Compatibility (HY) -16400 + (ID) 4000
Total energy: -157664.0 ( -78.01 by residue)
QMean score : 0.194
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