Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARRTEPPDGGWGWVVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEQAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPVVMTGGILAALGMLLASFATSLTHLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLATGLALTGVGLSSFTFAPFFQWLLSHYAWRGSLLLVSALSLHLVACGALLRPPSLAEDPAVGGPRAQLTSLLHHGPFLRYTVALTLINTGYFIPYLHLVAHLQDLDWDPLPAAFLLSVVAISDLVGRVVSGWLGDAVPGPVTRLLMLWTTLTGVSLALFPVAQAPT-----ALVALAVAYGFTSGALAPLAFSVLPELI--GTRRIYCGLGLLQMIESIGGLLGPPLSGYLRD-VTGNYTASFVVAGAFLLSGSGILLTLPHFFCFSTTTSGPQDLVTEALDTKVPLPKEGLEED |
| 4LEP Chain:A ((40-196)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILG-TKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVG----NGLFKPNAGNLVRKIYEGDDSKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLANYGVNKKSLAIVLALAALSVVASA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LEP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84625 for 979 contacts (-86.4/contact) +
2D Compatibility (PS) -15038 + (NN) -3766 + (LL) 17556
1D Compatibility (HY) -14000 + (ID) 1950
Total energy: -101823.0 ( -104.01 by residue)
QMean score : 0.120
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