Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MAWTKYQ-------------LFLAGLMLVTGS-INTLSAKWADNFMAEGCGGSKEHSFQHPFLQAVGMFLGEFSCLAAFYLLRCRAAGQSDSSVDPQQPFNPLLFLPPALCDMTGTSL-MYVALNMTSASSFQMLRGAVIIFTGLFSVAFLGRRLVLSQWLGILATIAGLVVVGLADLL-SKHDSQHKLSEVITGDLLIIMAQIIVAIQMVLEEKFVYKHNVHPL-RAVGTEGLFGFVILSLLLVP---MYYIPAGSFS-GNPRGTLEDALDAFCQVGQQPLIAVALLGNISSIA---FFNFAGISVTKELSATTR-MVLDSLRTV--VIWALSLALGWE------AFHALQILGFLILLIGTALYNGLH-RPLLGRLSRGRP-LAEESEQERLLGGTRTPINDAS |
| 2YIJ Chain:A ((19-417)) | FAKRWRDLSGQNHWKGMLQPLDQDLREYIIHYGEMAQAGYDTFNINTESQFAGASIYS--RKDFFAKVGLEIAHPY--TKYKVTKFIYATSDIHV--------PESFLLFPISWSKESNWMGYVAVTDDQGTALLGRRDIVVSWRG--SVQPFEFGLVNAIKIFGERNDQVQIHQGWYSIYMSQDERSPFTKTNARDQVLREVGRLLEKYK---DEEVSITICGHSLGAALATLSATDIVANGYNRPKSRPDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPIYPPIGYSEVGDEFPIDTRKSPYMKSPGNLATFHCLEGYLHGVAGTQGTNKADLFRLDVERAIGLVNKSVDGLKDECMVPGKWRVLKNKGMAQQDDGSWELVDHEIDDNEDL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YIJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -159389 for 2808 contacts (-56.8/contact) +
2D Compatibility (PS) -34818 + (NN) 8223 + (LL) 1448
1D Compatibility (HY) 15200 + (ID) 700
Total energy: -170036.0 ( -60.55 by residue)
QMean score : 0.087
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