Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
2BCG Chain:Y ((5-190))
YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGN------------
General information:
TITO was launched using:
RESULT:
Template:
2BCG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125353 for 1480 contacts (-84.7/contact) +
2D Compatibility (PS) -20680 + (NN) -8635 + (LL) 344
1D Compatibility (HY) -17600 + (ID) 4600
Total energy: -176524.0 ( -119.27 by residue)
QMean score : 0.611
(partial model without unconserved sides chains):
PDB file :
Tito_2BCG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BCG-query.scw
PDB file :
Tito_Scwrl_2BCG.pdb
: