Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSLVKIMGSFLALSLIMIFSSCIVNEHVDEGNIKENAVRMMECIVNKDSEKLFDFYNKD--MKDNYKDSSLDEIRQLFEYIDGAITSYNYEGKGGGQEAKNDGIICYYSCHPEFDFTTETGQEYTISFSYHYIWNEHP-EYEGINMIQICKDGNWGEKLIIGRNYYKE-----
1EA2 Chain:A ((2-127))
--------------------------NLPTAQEVQGLMARFIELVDVGDIEAIVQMYADDATVEDPFGQPPIHGREQIAAFY--------------RQGLKV-------RACLTGPVRASHNGCGAMPFRVEMVWNGQPCALDVIDVMRFDEHG----RIQTMQAYWSEVNLSV
General information:
TITO was launched using:
RESULT:
Template:
1EA2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21206 for 803 contacts (-26.4/contact) +
2D Compatibility (PS) -12130 + (NN) -2971 + (LL) 2876
1D Compatibility (HY) -7600 + (ID) 900
Total energy: -41931.0 ( -52.22 by residue)
QMean score : 0.282
(partial model without unconserved sides chains):
PDB file :
Tito_1EA2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EA2-query.scw
PDB file :
Tito_Scwrl_1EA2.pdb
: