Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAFSRFTPLIQSLPASVPFVGPEALERQHGRK--IAARIGANESGFGPAPSVLLAIRQAAGDTWKYADPENHDLKQALARHLGTSPANIAIGEGIDGLLGQIVRLVVEAGAPVVTSLGGYPTFNYHVAGHGGRLVTVPYAD-DREDLEGLLAAVGRENAPLVYLANPDNPMGSWWPAERVVAFAQALPETT-LLVLDEAYCETAPRDALPPIESLIDKPNVIRARTFSKAYGLAGARIGYTLS-TPGTAQAFDKIRNHFGMSRIGVAAAIAALADQDYLKEVTLKIANSRQRIGRIAADS-GLAPLPSATNFVAVDCGKDASYARAIVDRLMSDHGIFIRMPGVAPL--NRCIRISTAPDAEMDLLAAALPEVIRSLAAT |
| 1LC5 Chain:A ((3-357)) | -------------LFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHE-TGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREEGARFYQALCQLPLLTVYPGRANYLLLRCER---EDIDLQRRLL-TQRILIRSCANYPGLDSRYYRVAIRSAAQNERLLAALRNVL------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LC5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192704 for 2963 contacts (-65.0/contact) +
2D Compatibility (PS) -38316 + (NN) -27700 + (LL) 2084
1D Compatibility (HY) -12400 + (ID) 3600
Total energy: -272636.0 ( -92.01 by residue)
QMean score : 0.474
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