Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AARYDDVLYFPAS---RYPETGAHISDAIKAGHADVCTIERSGADKRRQESLKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLN-GYADGT------RILFIVQ-----------------------
1JMX Chain:A ((364-494))
--KVEEVKVVPAFSIARIGENGASVPKVQGRFEAEAWGKDANGQPLR----IGYLPAS--WKVEPFN----ERAVEDEDVKFAGKMQADGVFVPGGAGPNPERKMMTNNAGNLKVIATLADGGQTGEGHMIVTVQRWNNPPLP
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8084 for 564 contacts (14.3/contact) +
2D Compatibility (PS) -10135 + (NN) -1815 + (LL) 888
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -5828.0 ( -10.33 by residue)
QMean score : 0.219
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: