Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-PYLKEKSSATVYFQTVKHNNIRDLVRRCITRTSQVLVILMDVFTDVEIFCDILEAANKRGVFVCVL----------LDQGGVKLFQEMCDKVQISDSHLKNISIRSVEGEIYCAKSGRKFAGQIREKFIISDWRFVL--SGSYSFTWLCGHVHRNILSKFTGQAVELFDEEFRHLYASSKPVMGLKSP
1D7Y Chain:A ((116-236))
LPTLQGATMPVHTL---RTLEDARRIQAGLRPQSRLL-----IVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDL--RFERSVTGSVDGVVLLDDGTRIA-----------ADMVVVGIG-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118683 for 749 contacts (-158.5/contact) +
2D Compatibility (PS) -11979 + (NN) -4654 + (LL) 4960
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -134256.0 ( -179.25 by residue)
QMean score : 0.319
(partial model without unconserved sides chains):
PDB file :
Tito_1D7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D7Y-query.scw
PDB file :
Tito_Scwrl_1D7Y.pdb
: