Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTVPAGVDDYSYLVAAD--DQDG------TIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE
1JMX Chain:A ((282-363))
-----------------------------GKARLLAVQPA-FIKAGGESEITLVGSGLAGKPDLGAGVEVTEVLEQTPTLVRLKARAAADAKPGQREVAVGTLKGVNLAVYD---------------
General information:
TITO was launched using:
RESULT:
Template:
1JMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7365 for 490 contacts (-15.0/contact) +
2D Compatibility (PS) -7934 + (NN) -1241 + (LL) 3292
1D Compatibility (HY) -400 + (ID) 550
Total energy: -14198.0 ( -28.98 by residue)
QMean score : 0.125
(partial model without unconserved sides chains):
PDB file :
Tito_1JMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JMX-query.scw
PDB file :
Tito_Scwrl_1JMX.pdb
: