Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MARRTEPPDGGWGWVVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEQAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPVVMTGGILAALGMLLASFATSLTHLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLATGLALTGVGLSSFTFAPFFQWLLSHYAWRGSLLLVSALSLHLVACGALLRPPSLAEDPAVGGPRAQLTSLLHHGPFLRYTVALTLINTGYFIPYLHLVAHLQDLDWDPLPAAFLLSVVAISDLVGRVVSGWLGDAVPGPVTRLLMLWTTLTGVSLALFPVAQAPT-----ALVALAVAYGFTSGALAPLAFSVLPELI-GTRRIYCGLGLLQMIESIGGLLGPPLSGYLRD-VTGNYTASFVVAGAFLLSGSGILLTLPHFFCFSTTTSGPQDLVTEALDTKVPLPKEGLEED |
| 4TPG Chain:A ((40-196)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VQRLGFDDSRANLVWSACAALIYVSPAIGGWVGDKILG-TKRTMLLGAGILSVGYALMTVPTENTWFMFSALGVIVVG----NGLFKPNAGNLVRKIYE--SKIDSAFTIYYMAVNVGSTFSMLLTPWIKDYVNAQYGNEFGWHAAFAVCCVGILVGLGNYALMHKSLANYGSEPDTRPVNKKSLAIVLALAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 4TPG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95647 for 973 contacts (-98.3/contact) +
2D Compatibility (PS) -14754 + (NN) -4204 + (LL) 17436
1D Compatibility (HY) -14000 + (ID) 1950
Total energy: -113119.0 ( -116.26 by residue)
QMean score : 0.166
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